Attractive Interaction Between Pulses in a Model for Binary-Mixture Convection

Recent experiments on convection in binary mixtures have shown that the interaction between localized waves (pulses) can be repulsive as well as {\it attractive} and depends strongly on the relative {\it orientation} of the pulses. It is demonstrated that the concentration mode, which is characteristic of the extended Ginzburg-Landau equations introduced recently, allows a natural understanding of that result. Within the standard complex Ginzburg-Landau equation this would not be possible.Comment: 7 pages revtex with 3 postscript figures (uuencoded

Coexisting Pulses in a Model for Binary-Mixture Convection

We address the striking coexistence of localized waves (`pulses') of different lengths which was observed in recent experiments and full numerical simulations of binary-mixture convection. Using a set of extended Ginzburg-Landau equations, we show that this multiplicity finds a natural explanation in terms of the competition of two distinct, physical localization mechanisms; one arises from dispersion and the other from a concentration mode. This competition is absent in the standard Ginzburg-Landau equation. It may also be relevant in other waves coupled to a large-scale field.Comment: 5 pages revtex with 4 postscript figures (everything uuencoded

Convective and absolute Eckhaus instability leading to modulated waves in a finite box

We report experimental study of the secondary modulational instability of a one-dimensional non-linear traveling wave in a long bounded channel. Two qualitatively different instability regimes involving fronts of spatio-temporal defects are linked to the convective and absolute nature of the instability. Both transitions appear to be subcritical. The spatio-temporal defects control the global mode structure.Comment: 5 pages, 7 figures (ReVTeX 4 and amsmath.sty), final versio

Subcritical instabilities in a convective fluid layer under a quasi-1D heating

The study and characterization of the diversity of spatiotemporal patterns generated when a rectangular layer of fluid is locally heated beneath its free surface is presented. We focus on the instability of a stationary cellular pattern of wave number $k_s$ which undergoes a globally subcritical transition to traveling waves by parity-breaking symmetry. The experimental results show how the emerging traveling mode ($2/3k_{s}$) switches on a resonant triad ($k_s$, $k_s/2$, $2k_{s}/3$) within the cellular pattern yielding a ``mixed'' pattern. The nature of this transition is described quantitatively in terms of the evolution of the fundamental modes by complex demodulation techniques. The B\' enard-Marangoni convection accounts for the different dynamics depending on the depth of the fluid layer and on the vertical temperature difference. The existence of a hysteresis cycle has been evaluated quantitatively. When the bifurcation to traveling waves is measured in the vicinity of the codimension-2 bifurcation point, we measure a decrease of the subcritical interval in which the traveling mode becomes unstable. From the traveling wave state the system under goes a {\it new} global secondary bifurcation to an alternating pattern which doubles the wavelength ($k_{s}/2$) of the primary cellular pattern, this result compares well with theoretical predictions [P. Coullet and G. Ioss, {\em Phys. Rev. Lett.} {\bf 64}, 8 66 (1990)]. In this cascade of bifurcations towards a defect dynamics, bistability due to the subcritical behavior of our system is the reason for the coexistence of two different modulated patterns connected by a front. These fronts are stationary for a finite interval of the control parameters.Comment: 13 pages, 12 figure

A genetic network that suppresses genome rearrangements in Saccharomyces cerevisiae and contains defects in cancers.

Gross chromosomal rearrangements (GCRs) play an important role in human diseases, including cancer. The identity of all Genome Instability Suppressing (GIS) genes is not currently known. Here multiple Saccharomyces cerevisiae GCR assays and query mutations were crossed into arrays of mutants to identify progeny with increased GCR rates. One hundred eighty two GIS genes were identified that suppressed GCR formation. Another 438 cooperatively acting GIS genes were identified that were not GIS genes, but suppressed the increased genome instability caused by individual query mutations. Analysis of TCGA data using the human genes predicted to act in GIS pathways revealed that a minimum of 93% of ovarian and 66% of colorectal cancer cases had defects affecting one or more predicted GIS gene. These defects included loss-of-function mutations, copy-number changes associated with reduced expression, and silencing. In contrast, acute myeloid leukaemia cases did not appear to have defects affecting the predicted GIS genes

Convection in Binary Fluid Mixtures. II. Localized Traveling Waves. (Physical Review E, in press)

Nonlinear, spatially localized structures of traveling convection rolls are investigated in quantitative detail as a function of Rayleigh number for two different Soret coupling strengths (separation ratios) with Lewis and Prandtl numbers characterizing ethanol-water mixtures. A finite-difference method was used to solve the full hydrodynamic field equations numerically. Structure and dynamics of these localized traveling waves (LTW) are dominated by the concentration field. Like in the spatially extended convective states ( cf. accompanying paper), the Soret-induced concentration variations strongly influence, via density changes, the buoyancy forces that drive convection. The spatio-temporal properties of this feed-back mechanism, involving boundary layers and concentration plumes, show that LTW's are strongly nonlinear states. Light intensity distributions are determined that can be observed in side-view shadowgraphs. Detailed analyses of all fields are made using colour-coded isoplots, among others. In the frame comoving with their drift velocity, LTW's display a nontrivial spatio-temporal symmetry consisting of time-translation by half an oscillation period combined with vertical reflection through the horizontal midplane of the layer. A time-averaged concentration current is driven by a phase difference between the waves of concentration and vertical velocity in the bulk of the LTW state. The associated large-scale concentration redistribution stabilizes the LTW and controls its drift velocity into the quiescent fluid by generating a buoyancy-reducing concentration "barrier" ahead of the leading LTW front. The selection of the width of the LTW's is investigated and comparisons with experiments are presented.Comment: 18 pages and 6 figures as uuencoded Postscript file (using uufiles) 1 color figure as uuencoded Postscript file, a high resolution version of the color figure (about 10MB) can be requested from [email protected] or [email protected].: (Barten)present address: PSI, CH-5232 Villigen PSI, Switzerlan

Mutator Dynamics on a Smooth Evolutionary Landscape

We investigate a model of evolutionary dynamics on a smooth landscape which features a ``mutator'' allele whose effect is to increase the mutation rate. We show that the expected proportion of mutators far from equilibrium, when the fitness is steadily increasing in time, is governed solely by the transition rates into and out of the mutator state. This results is a much faster rate of fitness increase than would be the case without the mutator allele. Near the fitness equilibrium, however, the mutators are severely suppressed, due to the detrimental effects of a large mutation rate near the fitness maximum. We discuss the results of a recent experiment on natural selection of E. coli in the light of our model.Comment: 4 pages, 3 figure

Four-phase patterns in forced oscillatory systems

We investigate pattern formation in self-oscillating systems forced by an external periodic perturbation. Experimental observations and numerical studies of reaction-diffusion systems and an analysis of an amplitude equation are presented. The oscillations in each of these systems entrain to rational multiples of the perturbation frequency for certain values of the forcing frequency and amplitude. We focus on the subharmonic resonant case where the system locks at one fourth the driving frequency, and four-phase rotating spiral patterns are observed at low forcing amplitudes. The spiral patterns are studied using an amplitude equation for periodically forced oscillating systems. The analysis predicts a bifurcation (with increasing forcing) from rotating four-phase spirals to standing two-phase patterns. This bifurcation is also found in periodically forced reaction-diffusion equations, the FitzHugh-Nagumo and Brusselator models, even far from the onset of oscillations where the amplitude equation analysis is not strictly valid. In a Belousov-Zhabotinsky chemical system periodically forced with light we also observe four-phase rotating spiral wave patterns. However, we have not observed the transition to standing two-phase patterns, possibly because with increasing light intensity the reaction kinetics become excitable rather than oscillatory.Comment: 11 page

Bistability of Slow and Fast Traveling Waves in Fluid Mixtures

The appearence of a new type of fast nonlinear traveling wave states in binary fluid convection with increasing Soret effect is elucidated and the parameter range of their bistability with the common slower ones is evaluated numerically. The bifurcation behavior and the significantly different spatiotemporal properties of the different wave states - e.g. frequency, flow structure, and concentration distribution - are determined and related to each other and to a convenient measure of their nonlinearity. This allows to derive a limit for the applicability of small amplitude expansions. Additionally an universal scaling behavior of frequencies and mixing properties is found. PACS: 47.20.-k, 47.10.+g, 47.20.KyComment: 4 pages including 5 Postscript figure